VISDB Viral Integration Site DataBase

VIS ID

TVIS30010858

Fusion event

HIV-DNAJB14 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q23

Reference genome

Start

End

100819333/99898176 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-30c-5p ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-1284 ; hsa-mir-376c-3p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-548g-3p ; hsa-mir-548av-3p ; hsa-mir-187-5p ; hsa-mir-221-3p ; hsa-mir-222-3p ; hsa-mir-302f ; hsa-mir-3689a-5p ; hsa-mir-3689b-5p ; hsa-mir-3689e ; hsa-mir-3689f ; hsa-mir-3934-5p ; hsa-mir-500a-5p ; hsa-mir-501-5p ; hsa-mir-5089-3p ; hsa-mir-5093 ; hsa-mir-548a-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548v ; hsa-mir-552-3p ; hsa-mir-5582-3p ; hsa-mir-875-3p

Nearest miRNA

hsa-mir-12113/Upstream/900716; hsa-mir-1243/Downstream/1342619;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/244679, chr4-CpG: 68/Downstream/47995

Upstream sequence

ACTTATTTTTCTCAGTAACTACTTTACATACTAGTGTAATTAAAGGTTTAACTGGAAGAAAAATTCAGCATAAAAGTATAATTAAAGTAAAAAGCTGGTA

Downstream sequence

TTCCACATTCCTGTTCCTATGAACACCTGAGCTGGCACAAAAGCTGAGTAGTTTAATGCATTGGCATATATATGCCTTAAGGACTGTACTTTTCTCTACC