Basic Information
VIS ID
TVIS30010860
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
106279629/105358472 (Hg38)
End
106279629/105358472 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4028058; hsa-mir-1243/Downstream/4130226;
Nearest TSS
ENST00000502981/Upstream/180409; ENST00000265154/Downstream/41164;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/211661, chr4-CpG: 82/Downstream/114922
Nearby gene
TET2-AS1(No orient, 5591)
Upstream sequence
tcctcttcCAATAAGCAAGATTCTTTCCAGTTCACAAAGTTCTAAATTCGAAATCCTCCTTCAGATTCAGAAAAGCAACCTACAGTCTATAGCTGTTGTA
Downstream sequence
CTTTCTGCAGATTTCTGTATTAAATAAAATCTATCTGTAAATGGTTAAGTATATTCTAGAGACAAATTAACAGACATTAATGTAAATTACATTAATAGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate