Basic Information
VIS ID
TVIS30010865
Fusion event
HIV-LOC105377508 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
157232707/156311555 (Hg38)
End
157232707/156311555 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377508
Nearest miRNA
hsa-mir-12113/Upstream/3775039; hsa-mir-1305/Downstream/2817247;
Nearest TSS
ENST00000502981/Upstream/357638; ENST00000510753/Downstream/274424;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/357624, chr4-CpG: 72/Downstream/659989
Nearby gene
CTSO(No orient, 357659)
Upstream sequence
AGAACATTGAAACTATAGGTTATTGAAATTATGATCTGTATGATGCCCTTAATTCTCTACTTCATTTTGCTAATGCAATCACAGGTTTATTGTTCAGGGT
Downstream sequence
ACAGGACACATTTCTGAACCTCAAATTTCTTAGTCTGCACATTTCACATATTTTCCCTGATGCTGCCAACTATGAGCAAGCATGATTCTTTTCTACACAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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