Basic Information
VIS ID
TVIS30010867
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
167201261/166280109 (Hg38)
End
167201261/166280109 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/893772; hsa-mir-1305/Downstream/4906075;
Nearest TSS
ENST00000502981/Upstream/405151; ENST00000503003/Downstream/246010;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/405920, chr4-CpG: 27/Downstream/2038289
Nearby gene
TLL1(No orient, 175652)
Upstream sequence
TACAATATACAATTGACATCTATTTCACTCTGTCTAGacagcatcagaataaagtaagagctcagtttctggagtcacgatgtctatattcaaatcatag
Downstream sequence
ctacatgactcagaaaaagttacttaacttcccactgctttaaattcttcatctgcgaaatgaagataatgatagtatattcgtcttatggattttgtga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate