Basic Information
VIS ID
TVIS30010869
Fusion event
HIV-CEP44 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
175230587/174309436 (Hg38)
End
175230587/174309436 (Hg38)
Orient
+
Location type
Intronic
Target gene
CEP44
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-331-3p
Nearest miRNA
hsa-mir-12113/Upstream/1041203; hsa-mir-1305/Downstream/114359;
Nearest TSS
ENST00000502981/Upstream/636; ENST00000507483/Downstream/67009;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/25192, chr4-CpG: 53/Downstream/212819
Upstream sequence
AGACTTCTTTTTCTGTGTTTCTATGTCTTGTGATTTCTATATATCTCAGTATATCAATATACAGTTGGCACTTACAAAAACTACCAGATGGCCATTGGAC
Downstream sequence
CTACTTCCTGTTATATGGCAAACCGAACAATCTCAATGCACTAAGTGTTGTTTTTGGTCATTTCCTCTTAGCTTTGTGCTAAGCGTTGTTTCAAGAAGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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