VISDB Viral Integration Site DataBase

VIS ID

TVIS30010883

Fusion event

HIV-MRPS27 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q13.2

Reference genome

Start

End

71572300/72276473 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-155-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-4654 ; hsa-mir-4769-5p ; hsa-mir-6778-5p ; hsa-mir-3151-3p ; hsa-mir-629-3p ; hsa-mir-6818-5p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-188-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-891a-3p ; hsa-mir-3688-5p ; hsa-mir-198 ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-6716-5p ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-496 ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1825 ; hsa-mir-4267 ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-299-3p ; hsa-mir-4733-5p ; hsa-mir-6858-3p ; hsa-mir-576-3p ; hsa-mir-3154 ; hsa-mir-4428 ; hsa-mir-4646-3p ; hsa-mir-3679-3p ; hsa-mir-6749-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-642a-5p ; hsa-mir-2355-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-5193 ; hsa-mir-6832-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6793-3p ; hsa-mir-2114-5p

Nearest miRNA

hsa-mir-10397/Upstream/106933; hsa-mir-103a-1/Downstream/602118;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/167432, chr5-CpG: 66/Downstream/31516

Upstream sequence

gaaactggaccccttccttaccccttacacaaaaattaagtcaaaatggattaaagattcaaatgtaaaatctaaaactatagaaaccctagaagaaaat

Downstream sequence

cgaggcagtatcattcaggacataggcacaggcaaagatctcatgatgaaaatgtcaaaagcaattgcaacataaacagaaaatgacaaatgggatctaa