VISDB Viral Integration Site DataBase

VIS ID

TVIS30010885

Fusion event

HIV-JMY integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q14.1

Reference genome

Start

End

78614804/79318981 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-335-5p ; hsa-mir-130b-5p ; hsa-mir-203a-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-548a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-4671-3p ; hsa-mir-548ar-3p ; hsa-mir-5582-3p ; hsa-mir-548az-3p ; hsa-mir-6509-5p ; hsa-mir-224-3p ; hsa-mir-522-3p ; hsa-mir-628-3p ; hsa-mir-1257 ; hsa-mir-4694-3p ; hsa-mir-5188 ; hsa-mir-889-3p ; hsa-mir-16-1-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-144-3p ; hsa-mir-597-5p ; hsa-mir-759 ; hsa-mir-4330 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-1277-5p ; hsa-mir-320e ; hsa-mir-587 ; hsa-mir-885-5p ; hsa-mir-4704-5p ; hsa-mir-3591-5p ; hsa-mir-4473 ; hsa-mir-331-5p ; hsa-mir-1229-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-6802-3p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-4766-5p ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-6511b-3p ; hsa-mir-6511a-3p ; hsa-mir-6832-3p ; hsa-mir-4735-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p

Nearest miRNA

hsa-mir-10397/Upstream/6440318; hsa-mir-103a-1/Downstream/3521174;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/81309, chr5-CpG: 112/Downstream/194543

Upstream sequence

GTTGTCTCCCACTTTACAGTTCTTACTACCATGTGTTGTTTCCTTCTGCTGTAGCTTCTCAGGAAGCTGCTTAAGCTTGTGCCTAAAACTACCATCTTTG

Downstream sequence

CACTGACTAATTCCACAGCTGGACCTTCACATAAATGTGTGTTTAGCTCTTTCATTACAGATGGTCCACAGTGGCCCATTCACAGCACACCAGCAGCTGC