Fusion event
HIV-RASA1 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
86670608/87374791 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10397/Upstream/259837; hsa-mir-103a-1/Downstream/1292062;
Upstream sequence
AAATATGTTGTGAATCTGGTTTTAGGTCTAGCACACTGTTTTTTTTTTTAAAGCAGAAATAGGGGGTTTATTTGATACTAGAACTAAAGAAATAAGGTAG
Downstream sequence
TTTGATGCCAAAACATTTTGTTAATTCTTTTTCTCCTTGCTCCTTTAGTGATCTTCCTCCTGACATCAATAGATTTGAAATAACTCTTAGTAATAAAACA
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.