VISDB Viral Integration Site DataBase

VIS ID

TVIS30010898

Fusion event

HIV-SNX2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q23.2

Reference genome

Start

End

122155641/122819946 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-30c-5p ; hsa-let-7a-5p ; hsa-mir-6867-5p ; hsa-mir-574-5p ; hsa-mir-759 ; hsa-mir-513b-3p ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-3653-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-223-5p ; hsa-mir-497-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-410-3p ; hsa-mir-1273f ; hsa-mir-129-5p ; hsa-mir-143-3p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-3140-3p ; hsa-mir-3163 ; hsa-mir-380-3p ; hsa-mir-4534 ; hsa-mir-4653-3p ; hsa-mir-4708-5p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-6514-5p ; hsa-mir-6885-3p ; hsa-mir-744-3p ; hsa-mir-8055 ; hsa-mir-8082

Nearest miRNA

hsa-mir-10397/Upstream/3665230; hsa-mir-103a-1/Downstream/6277742;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/44472, chr5-CpG: 77/Downstream/25322

Upstream sequence

ATACTCATCTACAATGAGCATATTTATTGATGGTTCTGTTCTTAAGCAACTGGTGACATTTATTACTAGAGCATTCTTAGCACTTCAGAATGGTGCTTTC

Downstream sequence

TTTTATTTGGTAAAATTACCAATTTTACTTGTATTTTACCGTTTTAAATGTTCCTAATGCTGTTGGTGATTAATTTCTCAGTATTTAGAAATGTTAATAT