VISDB Viral Integration Site DataBase

VIS ID

TVIS30010900

Fusion event

HIV-PRRC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q23.2

Reference genome

Start

End

126865111/127529419 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-224-3p ; hsa-mir-522-3p ; hsa-mir-548n ; hsa-mir-548at-5p ; hsa-mir-4451 ; hsa-mir-6832-5p ; hsa-mir-183-5p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-5197-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-3123 ; hsa-mir-3925-5p ; hsa-mir-155-5p ; hsa-mir-4720-3p ; hsa-mir-4804-3p ; hsa-mir-578 ; hsa-mir-379-5p ; hsa-mir-3529-5p ; hsa-mir-4650-3p ; hsa-mir-643 ; hsa-mir-1248 ; hsa-mir-3614-3p

Nearest miRNA

hsa-mir-10397/Upstream/8374703; hsa-mir-103a-1/Downstream/1568269;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/11186, chr5-CpG: 200/Downstream/553483

Upstream sequence

CTTGTTTATTTTTTAATACCCCTCTGTACTTTTTTAAAAAGTTTTTTTTTGCATACAGACTACAACATTTTGTCCCTCGTTAAGAGCATGTGTCAGTGTG

Downstream sequence

TTTGTCATGAGTTGTAATAcccagttcaactctataggtcttgtaaatagtaagtcatgatgtttcagcatatggttggttggcagtcttaaatttcaat