Basic Information
VIS ID
TVIS30010902
Fusion event
HIV-ADAMTS19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
128909682/129573989 (Hg38)
End
128909682/129573989 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADAMTS19
Nearest miRNA
hsa-mir-10397/Upstream/176842; hsa-mir-103a-1/Downstream/2643860;
Nearest TSS
ENST00000502646/Upstream/112313; ENST00000509467/Downstream/114111;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/112265, chr5-CpG: 205/Downstream/329871
Upstream sequence
TTGGGAAATTTAGACCATTTGAATTTAGAAACCCCCCAAAGTCCTCATATTTTTTTTCAGTTGTTGGGATAAACTCTGGAAAATGGCAGCTTTCTATTCA
Downstream sequence
TCACACATTTACCCAATGTTGTCAGTGAACAATaatacttgttaagcatctactaagtaccacgggttttaaaatgtcacctcttttaacccttggagaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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