VISDB Viral Integration Site DataBase

VIS ID

TVIS30010904

Fusion event

HIV-KIF3A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q31.1

Reference genome

Start

End

132068067/132732375 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-3915 ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-3928-3p ; hsa-mir-545-5p ; hsa-mir-4496 ; hsa-mir-8066 ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-5687 ; hsa-mir-5590-3p ; hsa-mir-1224-3p ; hsa-mir-142-5p ; hsa-mir-888-5p ; hsa-mir-32-3p ; hsa-mir-8054 ; hsa-mir-548l ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-4282 ; hsa-mir-6821-5p ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4755-3p ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-342-3p ; hsa-mir-1228-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-1273e ; hsa-mir-1273g-3p ; hsa-mir-1281 ; hsa-mir-1292-3p ; hsa-mir-1297 ; hsa-mir-150-5p ; hsa-mir-1827 ; hsa-mir-188-5p ; hsa-mir-1910-3p ; hsa-mir-1915-3p ; hsa-mir-1976 ; hsa-mir-2467-3p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-3612 ; hsa-mir-3653-5p ; hsa-mir-377-5p ; hsa-mir-3929 ; hsa-mir-3934-5p ; hsa-mir-4252 ; hsa-mir-4257 ; hsa-mir-4279 ; hsa-mir-4419b ; hsa-mir-4459 ; hsa-mir-4465 ; hsa-mir-4478 ; hsa-mir-4485-5p ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-4722-3p ; hsa-mir-4722-5p ; hsa-mir-4726-3p ; hsa-mir-4768-3p ; hsa-mir-4780 ; hsa-mir-4793-3p ; hsa-mir-485-5p ; hsa-mir-508-5p ; hsa-mir-5089-5p ; hsa-mir-5095 ; hsa-mir-552-3p ; hsa-mir-562 ; hsa-mir-5697 ; hsa-mir-6086 ; hsa-mir-619-5p ; hsa-mir-623 ; hsa-mir-6499-3p ; hsa-mir-6504-3p ; hsa-mir-6506-5p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6513-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6764-5p ; hsa-mir-6778-3p ; hsa-mir-6780b-3p ; hsa-mir-6808-5p ; hsa-mir-6814-5p ; hsa-mir-6840-3p ; hsa-mir-6866-3p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7151-3p ; hsa-mir-7160-5p ; hsa-mir-7703 ; hsa-mir-8062 ; hsa-mir-933 ; hsa-mir-940

Nearest miRNA

hsa-mir-10397/Upstream/366776; hsa-mir-103a-1/Downstream/695221;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/75763, chr5-CpG: 74/Downstream/4628

Upstream sequence

acaaagttaccatgtgacctagtaattccactcttaggtatatacccaagagaaactaaacatatgttcacacaaaaatctgtaaaagaatgttcaaagt

Downstream sequence

aacattatctgtaatagctaaaaagtagaaacaacaaatgttcaccaactaataaatggataaacaaaatatgatatatctatacaatattattcagaca