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Viral Integration Site DataBase
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TVIS30010910
Basic Information
VIS ID
TVIS30010910
Fusion event
HIV-LARS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
GRCh37/hg19
Start
145508773/146129210 (Hg38)
End
145508773/146129210 (Hg38)
Orient
-
Location type
Intronic
Target gene
LARS
miRNAs that regulate target gene
hsa-mir-155-5p
;
hsa-mir-215-5p
;
hsa-mir-192-5p
;
hsa-mir-21-5p
;
hsa-mir-92b-3p
;
hsa-mir-331-3p
;
hsa-mir-106b-5p
;
hsa-mir-183-5p
;
hsa-mir-92a-3p
;
hsa-mir-5096
;
hsa-mir-218-5p
;
hsa-mir-1303
;
hsa-mir-6848-3p
;
hsa-mir-6843-3p
;
hsa-mir-5587-5p
;
hsa-mir-378a-5p
;
hsa-mir-197-3p
;
hsa-mir-411-5p
;
hsa-mir-6832-5p
;
hsa-mir-6801-5p
;
hsa-mir-193b-5p
;
hsa-mir-6131
;
hsa-mir-3663-5p
;
hsa-mir-3653-5p
;
hsa-mir-372-5p
;
hsa-mir-371a-5p
;
hsa-mir-616-5p
;
hsa-mir-373-5p
;
hsa-mir-371b-5p
;
hsa-mir-4716-5p
;
hsa-mir-484
;
hsa-mir-3155b
;
hsa-mir-3155a
;
hsa-mir-4781-3p
;
hsa-mir-483-5p
Nearest miRNA
hsa-mir-10397/Upstream/2449239; hsa-mir-103a-1/Downstream/2933103;
Nearest TSS
ENST00000502646/Upstream/24841;
ENST00000508019/Downstream/1006;
Nearest CpG islands
None/Target,
chr5-CpG: 87/Upstream/192419
,
chr5-CpG: 57/Downstream/73952
Upstream sequence
GAGTCAGGCTTTTAAAAAAAGAAAAACAAAAAAACCTTCAGTGAGATTAGACAATATAACTATTTTACGGTTCTTGATTATAGTTTCATACCAAGGATAC
Downstream sequence
CATCTGTAATTGTGTGCTCAGAGTTCAAACTTGACTACACATAACACACTTGCACAGCCCCTGATCTAATGTTCCCTAGAATTCAAGCTGTGAAGTCTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Jurkat CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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