Basic Information
VIS ID
TVIS30010913
Fusion event
HIV-UIMC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
176338962/176911961 (Hg38)
End
176338962/176911961 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
UIMC1
Nearest miRNA
hsa-mir-10397/Upstream/282461; hsa-mir-1229/Downstream/2886317;
Nearest TSS
ENST00000502646/Upstream/4654; ENST00000510933/Downstream/56928;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/24300, chr5-CpG: 128/Downstream/93892
Nearest cancer related gene
UIMC1(TSG, No orient, 0)
Upstream sequence
AGTTAATACAACCAGTCTTTCCTCACTACACTAATACCACCTCCCAATTCTAGTGGGTATAAATGGCTTTAGCCCAAATGATACACAAATACATTGTCTC
Downstream sequence
TCACACCAAAAGACATCTGTTTATAAAATAGTCTCTTAAAGGATCTTGGAGGTTATTTAATCAAGTGTTTTCCAGCTCATTCCTTGCATAACAAGAAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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