Basic Information
VIS ID
TVIS30010920
Fusion event
HIV-LOC202181 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
177092677/177665676 (Hg38)
End
177092677/177665676 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA5G
Target gene
LOC202181
Nearest miRNA
hsa-mir-10397/Upstream/1036176; hsa-mir-1229/Downstream/2132602;
Nearest TSS
ENST00000502646/Upstream/54423; ENST00000509363/Downstream/16618;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/57017, chr5-CpG: 90/Downstream/5957
Upstream sequence
ccaatctttaatatataagtagatttaacaaatgaataagaaatgttggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggc
Downstream sequence
gggtggatcacttgaggtcaggagtttgagaccagcctgaccaacatggtaaaaccccgtgtctactaaaaatacaaaattagctgggcatggtggcaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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