Basic Information
VIS ID
TVIS30010938
Fusion event
HIV-ITPR3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
33614147/33646370 (Hg38)
End
33614147/33646370 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
ITPR3
miRNAs that regulate target gene
hsa-mir-1226-3p ; hsa-mir-877-3p ; hsa-mir-23b-3p ; hsa-mir-96-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1236/Upstream/207933; hsa-mir-10398/Downstream/51758;
Nearest TSS
ENST00000381078/Upstream/24991; ENST00000526556/Downstream/52287;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/12414, chr6-CpG: 20/Downstream/41819
Upstream sequence
ATATAAGAAAATCTAACTAGGTAATTTATTCATTCTGTTAAAACATCAAAACACCATACAAACACAGACTGAGAGTCTGctcccaccctcttcccacccc
Downstream sequence
ccaccccctccaccactgcctctttaggtcatcactgtctttaattgcttatgtctcttccagtgttccattctgcaaatacaaacatatatccagattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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