Basic Information
VIS ID
TVIS30010940
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
End
40337856/40370117 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-1236/Upstream/1295736; hsa-mir-10398/Downstream/1228606;
Nearby gene
TDRG1(No orient, 8307)
Nearest cancer related gene
TDRG1(TSG, No orient, 8307)
Upstream sequence
aacattttgcattctcaccaacaatgtacaaggattccagtttttccacatcctcttcaacactttggtttttctgataatagccatcctgagaagtgtg
Downstream sequence
agatgttagctcattgtggttttgacttacatttccttgatgtttattgatgttgaacgttgatgtttagtaacctaactatcaggttaatagtttgttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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