VISDB Viral Integration Site DataBase

VIS ID

TVIS30010945

Fusion event

HIV-TNFRSF21 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p12.3

Reference genome

Start

End

47245631/47277895 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-193b-3p ; hsa-mir-130b-3p ; hsa-mir-98-5p ; hsa-mir-93-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-584-5p ; hsa-mir-4635 ; hsa-mir-20a-3p ; hsa-mir-4729 ; hsa-mir-6807-3p ; hsa-mir-5579-5p ; hsa-mir-217 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-106a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-17-5p ; hsa-mir-4531 ; hsa-mir-3653-3p ; hsa-mir-4516 ; hsa-mir-5703 ; hsa-mir-4434 ; hsa-mir-1468-3p ; hsa-mir-605-3p ; hsa-mir-4698 ; hsa-mir-3688-3p ; hsa-mir-8076 ; hsa-mir-5583-3p ; hsa-mir-4694-3p ; hsa-mir-8485 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-3529-3p ; hsa-mir-3065-5p ; hsa-mir-548c-3p ; hsa-mir-34a-5p ; hsa-mir-3191-5p

Nearest miRNA

hsa-mir-10398/Upstream/2080125; hsa-mir-10524/Downstream/4866454;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/542316, chr6-CpG: 123/Downstream/30824

Upstream sequence

aacccaggtttatgaatttctagtctatgatgcttctttcttacccaAAAGCTTCATCTCCTGTGCCTCCCTCACTCCCACTTCAGCCCAACCACATTAC

Downstream sequence

TCCTACAAGCATCTCATGCTTGTCTGCTAACGCCACGCACAAGGTTAATCCATTTCCACACTAGTTAAACACGAGCACCTAAGCATTTACGAAGCTGCCT