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TVIS30010947
Basic Information
VIS ID
TVIS30010947
Fusion event
HIV-CD2AP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
47538897/47571161 (Hg38)
End
47538897/47571161 (Hg38)
Orient
+
Location type
Intronic
Target gene
CD2AP
miRNAs that regulate target gene
hsa-mir-130b-3p
;
hsa-mir-128-3p
;
hsa-mir-124-3p
;
hsa-mir-30b-5p
;
hsa-mir-1-3p
;
hsa-mir-19b-3p
;
hsa-mir-484
;
hsa-mir-186-5p
;
hsa-mir-92a-3p
;
hsa-let-7a-5p
;
hsa-mir-216a-3p
;
hsa-mir-3681-3p
;
hsa-mir-188-5p
;
hsa-mir-491-3p
;
hsa-mir-586
;
hsa-mir-548n
;
hsa-mir-3148
;
hsa-mir-3688-3p
;
hsa-mir-6073
;
hsa-mir-6083
;
hsa-mir-6866-3p
;
hsa-mir-190a-3p
;
hsa-mir-1277-5p
;
hsa-mir-5011-5p
;
hsa-mir-27a-3p
;
hsa-mir-27b-3p
;
hsa-mir-15a-5p
;
hsa-mir-16-5p
;
hsa-mir-15b-5p
;
hsa-mir-195-5p
;
hsa-mir-424-5p
;
hsa-mir-497-5p
;
hsa-mir-891b
;
hsa-mir-4517
;
hsa-mir-4524a-5p
;
hsa-mir-4524b-5p
;
hsa-mir-6838-5p
;
hsa-mir-30a-5p
;
hsa-mir-30c-5p
;
hsa-mir-30d-5p
;
hsa-mir-30e-5p
;
hsa-mir-3606-5p
;
hsa-mir-3607-3p
;
hsa-mir-548ao-5p
;
hsa-mir-5585-5p
;
hsa-mir-548ax
;
hsa-mir-551b-5p
;
hsa-mir-32-5p
;
hsa-mir-92b-3p
;
hsa-mir-6074
;
hsa-mir-625-3p
;
hsa-mir-3182
;
hsa-mir-141-5p
;
hsa-mir-6891-5p
;
hsa-mir-3173-3p
;
hsa-mir-4428
;
hsa-mir-6124
;
hsa-mir-921
;
hsa-mir-6804-3p
;
hsa-mir-3065-3p
;
hsa-mir-376b-3p
;
hsa-mir-376a-3p
;
hsa-mir-4477a
;
hsa-mir-103b
;
hsa-mir-664a-3p
;
hsa-mir-646
;
hsa-mir-503-5p
;
hsa-mir-4789-5p
;
hsa-mir-3941
;
hsa-mir-4797-5p
;
hsa-mir-603
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-8485
;
hsa-mir-548c-3p
Nearest miRNA
hsa-mir-10398/Upstream/2373391; hsa-mir-10524/Downstream/4573188;
Nearest TSS
ENST00000381078/Upstream/37476;
ENST00000463175/Downstream/5352;
Nearest CpG islands
None/Target,
chr6-CpG: 120/Upstream/92806
,
chr6-CpG: 44/Downstream/497240
Upstream sequence
CTGTGAAAATTGTACTTTAGAATAATCTCTTAAAGTTGTCTTTATCAATATATGATTTATTAATACCATGGATAGTTTCATTTTAAAAATGCCTTTTAGA
Downstream sequence
TATGCACCTAATATACTAATCTGTATCAGAATATTGCTTTGTCCAACAGGCTGGTTATTGGAGGTATATAttaaaactatatagaatacacttctggcaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Jurkat CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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