Basic Information
VIS ID
TVIS30010955
Fusion event
HIV-UFL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
96997639/96549763 (Hg38)
End
96997639/96549763 (Hg38)
Orient
+
Location type
Exonic
Target gene
UFL1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-744-3p ; hsa-mir-1273e ; hsa-mir-203a-3p ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-mir-335-3p ; hsa-mir-4762-3p ; hsa-mir-4256 ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p
Nearest miRNA
hsa-mir-10398/Upstream/5028026; hsa-mir-1202/Downstream/1474768;
Nearest TSS
ENST00000381078/Upstream/27955; ENST00000450218/Downstream/12785;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/27539, chr6-CpG: 83/Downstream/287191
Nearest cancer related gene
UFL1(TSG, No orient, 0)
Upstream sequence
TCCAGATGACACACAGGCTGCTCTTACCAAACACTTGCTGAAGTCAGTGTGTACTGATATCACTAACCTCATTTTCAACTTCTTAGCTTCGGATTTAATG
Downstream sequence
ATGGCAGTAGACGATCCTGCAGCCATTACAAGTGAAGTATGTTAATGATCTCCCTACCACTATTGATGTGTTCTGTTTTGCATCTATACACATTTTATTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate