VISDB Viral Integration Site DataBase

VIS ID

TVIS30010960

Fusion event

HIV-RPF2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q21

Reference genome

Start

End

111311493/110990290 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-5696 ; hsa-mir-340-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-942-5p ; hsa-mir-29a-5p ; hsa-mir-3920 ; hsa-mir-6758-3p ; hsa-mir-4729 ; hsa-mir-654-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-506-5p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-3689f ; hsa-mir-3689e ; hsa-mir-3689b-5p ; hsa-mir-3689a-5p ; hsa-mir-885-3p ; hsa-mir-4660 ; hsa-mir-488-5p ; hsa-mir-335-5p ; hsa-mir-5197-5p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4694-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-6771-5p ; hsa-mir-7977 ; hsa-mir-7160-5p ; hsa-mir-298 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-6510-3p ; hsa-mir-6888-3p ; hsa-mir-4522 ; hsa-mir-3120-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3065-5p ; hsa-mir-3613-3p ; hsa-mir-3664-5p ; hsa-mir-3529-3p

Nearest miRNA

hsa-mir-10398/Upstream/4206070; hsa-mir-1202/Downstream/8078757;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/8008, chr6-CpG: 126/Downstream/96933

Upstream sequence

gcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccctagttttccttttaatactctttttctcttcaggatcccatgttgcatttag

Downstream sequence

ttttcatgcctccttagtcttctccaatttgtgacagttccttagtctttcattgtctttgatgaccttgacatttttgacaagtacttgtcagttattt