VISDB Viral Integration Site DataBase

VIS ID

TVIS30010963

Fusion event

HIV-NUS1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q22.1

Reference genome

Start

End

118013903/117692740 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-32-5p ; hsa-mir-877-3p ; hsa-mir-31-3p ; hsa-mir-484 ; hsa-mir-197-3p ; hsa-mir-29b-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-27a-3p ; hsa-mir-105-5p ; hsa-mir-27b-3p ; hsa-mir-144-3p ; hsa-mir-369-3p ; hsa-mir-374a-5p ; hsa-mir-651-3p ; hsa-mir-374b-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-7853-5p ; hsa-mir-548t-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-548az-5p ; hsa-mir-2115-3p ; hsa-mir-490-3p ; hsa-mir-552-5p ; hsa-mir-580-3p ; hsa-mir-1277-5p ; hsa-mir-4490 ; hsa-mir-33a-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-1283 ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-34b-3p ; hsa-mir-6827-5p ; hsa-mir-504-3p ; hsa-mir-3682-3p ; hsa-mir-4705 ; hsa-mir-205-3p ; hsa-mir-649 ; hsa-mir-548n ; hsa-mir-107 ; hsa-mir-641 ; hsa-mir-103a-3p ; hsa-mir-3617-5p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-6794-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4639-3p ; hsa-mir-5697 ; hsa-mir-3680-5p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-8064

Nearest miRNA

hsa-mir-10398/Upstream/10908520; hsa-mir-1202/Downstream/1376307;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/16528, chr6-CpG: 166/Downstream/214139

Upstream sequence

gtacattagactgtgagtgaggaacataacaggctctagaccactgctgcagtttataatttcttggagaagaaccttaaagagtttaggcctcagtttc

Downstream sequence

tgaatccataaagattttaagtaagtgatctcttaaaattcctaagtctaaatttctgtcatATTCACATGCCACTACTTAAGTAGTTACCTCTGTTCTT