Basic Information
VIS ID
TVIS30010964
Fusion event
HIV-FAM184A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
119316393/118995228 (Hg38)
End
119316393/118995228 (Hg38)
Orient
+
Location type
Intronic
Target gene
FAM184A
Nearest miRNA
hsa-mir-10398/Upstream/12211008; hsa-mir-1202/Downstream/73819;
Nearest TSS
ENST00000381078/Upstream/15026; ENST00000282561/Downstream/24838;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/60062, chr6-CpG: 127/Downstream/82698
Upstream sequence
AATTTCAggccaggcatggtggctcatgtctgtaatcccagcactttgggaggctgaggcagtggatcgcttgagcccaggagttcgagaccagcctggg
Downstream sequence
taacatggtgaaaacctgtatctacaaaaaatgcaaaaattaactgagtgtggtgatacctgcctgtagtttcagctacttgggaggctgagaagtggga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate