VISDB Viral Integration Site DataBase

VIS ID

TVIS30010965

Fusion event

HIV-SERINC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q22.31

Reference genome

Start

End

122786421/122465276 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-149-5p ; hsa-mir-92a-3p ; hsa-mir-624-3p ; hsa-mir-450a-2-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6810-5p ; hsa-mir-2110 ; hsa-mir-3941 ; hsa-mir-92a-1-5p ; hsa-mir-6780b-5p ; hsa-mir-4271 ; hsa-mir-4725-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-320e ; hsa-mir-203a-3p ; hsa-mir-3646 ; hsa-mir-5089-5p ; hsa-mir-4792 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-136-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-5571-5p ; hsa-mir-147a ; hsa-mir-2113 ; hsa-mir-223-5p ; hsa-mir-5010-3p ; hsa-mir-574-5p ; hsa-mir-6818-5p ; hsa-mir-6867-5p

Nearest miRNA

hsa-mir-10398/Upstream/2450019; hsa-mir-1202/Downstream/4019355;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/65055, chr6-CpG: 28/Downstream/6337

Upstream sequence

tctaagttatcaaaggaaaaagttaacgagcaacacaattcatttggcagaatccccaaatagttcaggaactggtggcaccaggagtctctgtaagtga

Downstream sequence

cactaaaggtatagtaaaaatagatgattggttgaatgtctttccaaagagcagttaagactcccagatttcattccatttcttgcactagtcacctgaa