Basic Information
VIS ID
TVIS30010966
Fusion event
HIV-LINC02536 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
128003870/127682725 (Hg38)
End
128003870/127682725 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02536
Nearest miRNA
hsa-mir-10398/Upstream/1198012; hsa-mir-1202/Downstream/4109447;
Nearest TSS
ENST00000381078/Upstream/18171; ENST00000417390/Downstream/218233;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/166164, chr6-CpG: 173/Downstream/836288
Nearby gene
THEMIS(No orient, 25469)
Upstream sequence
CTCCCCAGAACAGGGCAACAACAGGCCAGCAATTAAATTCTGATattaagtagtaaaggtttaacactcaaagaacacctgcgaaagctgaagaggtggc
Downstream sequence
catgtcctcaaatgcacagataccaatgtaaggacacaggattgtgaaaaatcagaaaaatgacgccaccaaaagaaaccaataaagctccagcaaccaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate