Basic Information
VIS ID
TVIS30010969
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
132778516/132457377 (Hg38)
End
132778516/132457377 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/342114; hsa-mir-1202/Downstream/2521961;
Nearest TSS
ENST00000381078/Upstream/55832; ENST00000434551/Downstream/55685;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/55615, chr6-CpG: 56/Downstream/55282
Nearby gene
STX7(No orient, 147)
Upstream sequence
TATCTTGTGACCTCAGTGAATGAGATGCTGCTTTATCCAATCTACTGACTTTGGAAAATCCAGCTGAAATGAGGAAAGATAATCGTGCATGTCTGGCAAC
Downstream sequence
CAGGTAATTTCTTTCCTATCTTTCATGTCACAGTATTTTGAGGACACAAATTCCTAAATACTCAGAAAAAAATGGTTTTATCTTAATTGATTTATAAATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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