Basic Information
VIS ID
TVIS30010971
Fusion event
HIV-VTA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
142482514/142161377 (Hg38)
End
142482514/142161377 (Hg38)
Orient
+
Location type
Intronic
Target gene
VTA1
miRNAs that regulate target gene
hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-222-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-6515-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-936 ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-877-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1281 ; hsa-mir-660-3p ; hsa-mir-4485-5p ; hsa-mir-4707-3p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-7108-3p ; hsa-mir-369-3p ; hsa-mir-6769a-3p ; hsa-mir-3943 ; hsa-mir-4323 ; hsa-mir-5186
Nearest miRNA
hsa-mir-10398/Upstream/1477494; hsa-mir-1202/Downstream/8941298;
Nearest TSS
ENST00000381078/Upstream/14120; ENST00000491881/Downstream/8969;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/14056, chr6-CpG: 84/Downstream/140069
Upstream sequence
ATTTGCTTTTGTGTATCAATATGTATTCTATTGAGTGCCACATTTTTTAACCTATCAAAGCCTCACTCCTCACAGTTGCTTTTATATCTTTTTGCGTGTG
Downstream sequence
TTTTTATCATGCGTATTTCATAGTTTTATGTTCTTATGGATAAGCAAGGATGTGTTAGAATGTTAATGTTCAAATTCTAAGGAACTTTGGATTACATATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate