VISDB Viral Integration Site DataBase

VIS ID

TVIS30010973

Fusion event

HIV-SERAC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q25.3

Reference genome

Start

End

158569478/158148446 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-9-5p ; hsa-mir-122-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-924 ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-5007-5p ; hsa-mir-4635 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6804-5p ; hsa-mir-3176 ; hsa-mir-3922-3p ; hsa-mir-3190-5p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-34b-3p ; hsa-mir-6086 ; hsa-mir-1304-5p ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-610 ; hsa-mir-1233-3p ; hsa-mir-6840-3p ; hsa-mir-1225-3p ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-556-5p

Nearest miRNA

hsa-mir-10398/Upstream/619246; hsa-mir-1913/Downstream/461261;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/61352, chr6-CpG: 68/Downstream/19409

Upstream sequence

ATCTCCATATTTATTCACAATTACCTAAGGAAGGAAGAAAATTGTCAAAAGCATTAAGCCCTTAAAATTAAATACAGTCCAAGAGAATAATGTTAATTAC

Downstream sequence

TTTGCtttttttttgagacagagtctcactctgtcacccaggctggagtgcagtggcatgatcttggctcattgcaacctctgcctcctgagttcaagtc