Basic Information
VIS ID
TVIS30010974
Fusion event
HIV-WTAP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
160160251/159739219 (Hg38)
End
160160251/159739219 (Hg38)
Orient
-
Location type
Intronic
Target gene
WTAP
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-124-3p ; hsa-mir-758-3p ; hsa-mir-6808-3p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-586 ; hsa-mir-548l ; hsa-mir-548an ; hsa-mir-548n ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-1299 ; hsa-mir-4775 ; hsa-mir-422a ; hsa-mir-378i ; hsa-mir-378h ; hsa-mir-378f ; hsa-mir-378e ; hsa-mir-378d ; hsa-mir-378c ; hsa-mir-378b ; hsa-mir-378a-3p ; hsa-mir-4638-3p ; hsa-mir-590-3p
Nearest miRNA
hsa-mir-10398/Upstream/974466; hsa-mir-1913/Downstream/6770135;
Nearest TSS
ENST00000381078/Upstream/11631; ENST00000462110/Downstream/2374;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/11186, chr6-CpG: 105/Downstream/22178
Upstream sequence
TGTGCCAGATATTGTTTTTAATGTTGTTCTATCCTCAAATAATTTAATGTACTTTTTGAGCATACTATGACCTATTTCTTATATTAACACCGAGGAAAAC
Downstream sequence
GTAACACTTTAAAGAACTACTAGGAAGCTATAAGTTTAACAAATATATGGCTTGTTTTGTGTAGTTTTTCCTTTCGTGTTTAACATTTGAAAAAGAAATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate