Basic Information
VIS ID
TVIS30010975
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
160685251/160264219 (Hg38)
End
160685251/160264219 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/1499466; hsa-mir-1913/Downstream/6245135;
Nearest TSS
ENST00000381078/Upstream/5203; ENST00000419196/Downstream/8398;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/5550, chr6-CpG: 160/Downstream/83163
Nearby gene
SLC22A2(No orient, 5288)
Upstream sequence
TCATTGCCATAATTTTCTGCTTTCGTTTTTTAAAAGTTTGGGTTAGCAACCAATTTCCTCCTTGACCAGGTGATTTTTTCCTTAGACTGTTTATCCAGAG
Downstream sequence
CATTAAGGAAAACAGAGCATACCACCCTCCCACCATAGCTGATAAGGGGATTCAACACAGGTGCGTGTGCTAGAGTTAAGGGAACATATTATGCTAACAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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