Basic Information
VIS ID
TVIS30010986
Fusion event
HIV-PHF14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
11152791/11113164 (Hg38)
End
11152791/11113164 (Hg38)
Orient
+
Location type
Intronic
Target gene
PHF14
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-128-3p ; hsa-mir-122-5p ; hsa-mir-183-5p ; hsa-mir-5585-3p ; hsa-mir-4474-5p ; hsa-mir-4635 ; hsa-mir-3613-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p
Nearest miRNA
hsa-mir-339/Upstream/4046119; hsa-mir-10399/Downstream/7014056;
Nearest TSS
ENST00000635602/Upstream/2183; ENST00000425837/Downstream/266591;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/138903, chr7-CpG: 25/Downstream/718617
Upstream sequence
GCATTTTTTGTTTGGGATTTTCTCCTACCCCCAGCAAACAAGTTAGGAAAACAATTTTTGAAATAGGATTTCCCACCTTTTTTAAATATACCTTTTTGCA
Downstream sequence
TATATTCTTTTGAGAAGGCTCAATAATACTATAAATATGTAGTATTATGTTAAATGTTAAGTTATACAGTAATGTTGTTAATGAACATTGAAAAGGCAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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