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Viral Integration Site DataBase
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TVIS30010987
Basic Information
VIS ID
TVIS30010987
Fusion event
HIV-TMEM106B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
12272785/12233159 (Hg38)
End
12272785/12233159 (Hg38)
Orient
-
Location type
UTR3
Target gene
TMEM106B
miRNAs that regulate target gene
hsa-mir-375
;
hsa-mir-877-5p
;
hsa-mir-30b-5p
;
hsa-mir-10a-5p
;
hsa-mir-19a-3p
;
hsa-mir-19b-3p
;
hsa-mir-651-3p
;
hsa-mir-1252-5p
;
hsa-mir-376c-3p
;
hsa-mir-510-3p
;
hsa-mir-4738-3p
;
hsa-mir-5582-3p
;
hsa-mir-6864-5p
;
hsa-mir-6126
;
hsa-mir-526b-5p
;
hsa-mir-6124
;
hsa-mir-5584-3p
;
hsa-mir-4635
;
hsa-mir-148a-5p
;
hsa-mir-6511a-5p
;
hsa-mir-3714
;
hsa-mir-1910-3p
;
hsa-mir-6807-5p
;
hsa-mir-670-3p
;
hsa-mir-4752
;
hsa-mir-6833-5p
;
hsa-mir-3190-3p
;
hsa-mir-6077
;
hsa-mir-7-5p
;
hsa-mir-145-3p
;
hsa-mir-4289
;
hsa-mir-4302
;
hsa-mir-7156-3p
;
hsa-mir-6516-3p
;
hsa-mir-1206
;
hsa-mir-1255b-5p
;
hsa-mir-1255a
;
hsa-mir-8084
;
hsa-mir-574-5p
;
hsa-mir-297
;
hsa-mir-3924
;
hsa-mir-190a-3p
;
hsa-mir-6867-5p
;
hsa-mir-223-5p
;
hsa-mir-567
;
hsa-mir-5011-5p
;
hsa-mir-4279
;
hsa-mir-7151-3p
;
hsa-mir-5095
;
hsa-mir-365b-5p
;
hsa-mir-365a-5p
;
hsa-mir-8052
;
hsa-mir-3199
;
hsa-mir-6789-3p
;
hsa-mir-6778-3p
;
hsa-mir-4707-3p
;
hsa-mir-1976
;
hsa-mir-3653-5p
;
hsa-mir-1292-3p
;
hsa-mir-6747-3p
;
hsa-mir-6727-3p
;
hsa-mir-4722-3p
;
hsa-mir-4532
;
hsa-mir-1247-3p
;
hsa-mir-4258
;
hsa-mir-4740-3p
;
hsa-mir-122-3p
;
hsa-mir-4438
;
hsa-mir-6083
Nearest miRNA
hsa-mir-339/Upstream/5166114; hsa-mir-10399/Downstream/5894061;
Nearest TSS
ENST00000635602/Upstream/2801;
ENST00000443874/Downstream/100567;
Nearest CpG islands
None/Target,
chr7-CpG: 39/Upstream/21571
,
chr7-CpG: 45/Downstream/170378
Upstream sequence
GGCCAAAATAAAACCTATTTAGAAATTTAATCACTTTGCACATCACTTGGAATATGATGCCTCTAGTAGTTACTTTTTTATAGTTTTCTACTTTTGGTTT
Downstream sequence
TATTTAAAATTGTTTTCAAATATAGATTATTGACTTATTCAACTTTGCTGTTTTATATTTTCAGTATCATTTTTCATTTTTTTTTTTTTTTGTCTTTTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Jurkat CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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