Basic Information
VIS ID
TVIS30010987
Fusion event
HIV-TMEM106B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
End
12272785/12233159 (Hg38)
Orient
-
Location type
UTR3
Target gene
Nearest miRNA
hsa-mir-339/Upstream/5166114; hsa-mir-10399/Downstream/5894061;
Upstream sequence
GGCCAAAATAAAACCTATTTAGAAATTTAATCACTTTGCACATCACTTGGAATATGATGCCTCTAGTAGTTACTTTTTTATAGTTTTCTACTTTTGGTTT
Downstream sequence
TATTTAAAATTGTTTTCAAATATAGATTATTGACTTATTCAACTTTGCTGTTTTATATTTTCAGTATCATTTTTCATTTTTTTTTTTTTTTGTCTTTTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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