Basic Information
VIS ID
TVIS30010991
Fusion event
HIV-CDCA7L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
21963802/21924184 (Hg38)
End
21963802/21924184 (Hg38)
Orient
+
Location type
Intronic
Target gene
CDCA7L
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-375 ; hsa-mir-484
Nearest miRNA
hsa-mir-1183/Upstream/453038; hsa-mir-10399/Downstream/4025735;
Nearest TSS
ENST00000635602/Upstream/7287; ENST00000435127/Downstream/20689;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/380489, chr7-CpG: 85/Downstream/21269
Upstream sequence
attaagtataatattttttaaattaaaGCTTTTCCATAACTCAATGATATCTAAATTCATCCTTCCTGGATTAAAAAATACAACCTCCTACCCAGAAGGA
Downstream sequence
ACACATTTATCAGTATTAGTTTTTGAAGAGAAAGAAAATAAGATTCACTTTTTAGGCCAACTGATACAAGGGCTGATTCTGATATACTCCAAGAATATTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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