VISDB Viral Integration Site DataBase

VIS ID

TVIS30010994

Fusion event

HIV-HNRNPA2B1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p15.2

Reference genome

Start

End

26235255/26195635 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-1296-5p ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-191-5p ; hsa-mir-27b-3p ; hsa-mir-30c-5p ; hsa-mir-197-3p ; hsa-mir-92a-3p ; hsa-let-7f-5p ; hsa-mir-1260b ; hsa-mir-124-3p ; hsa-mir-340-5p ; hsa-let-7c-3p ; hsa-mir-548c-3p ; hsa-mir-4446-5p ; hsa-mir-580-3p ; hsa-mir-539-5p ; hsa-mir-302a-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-5582-3p ; hsa-mir-552-5p ; hsa-mir-7158-3p ; hsa-mir-4539 ; hsa-mir-1224-3p ; hsa-mir-4724-5p ; hsa-mir-140-3p ; hsa-mir-708-3p ; hsa-mir-1273d ; hsa-mir-4709-3p ; hsa-mir-3185 ; hsa-mir-3156-5p ; hsa-mir-6838-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-497-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-107 ; hsa-mir-4477a ; hsa-mir-3529-3p ; hsa-mir-944 ; hsa-mir-551b-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-374a-3p ; hsa-mir-623 ; hsa-mir-361-5p ; hsa-mir-570-3p ; hsa-mir-6832-3p ; hsa-mir-2115-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4641 ; hsa-mir-4786-3p ; hsa-mir-7843-3p

Nearest miRNA

hsa-mir-1183/Upstream/245649; hsa-mir-10399/Downstream/973845;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/42498, chr7-CpG: 263/Downstream/4163

Upstream sequence

TTAAATCCAGTATTCTGTACTTTTCCAGAGAAGCACGTACAAAGATATATCTAGATCCAATCATTTTGCTTGAGAAAAGATGAGATACTCTGATGGTTAT

Downstream sequence

CTTTACATTTTCATTTAAAATGGCACTCTATTCCTTAGGCTATAACAGCTAAGATGGCAAAACTACTTAGAAATAACTGGACCACTATCACCCAAGCCAT