Basic Information
VIS ID
TVIS30011000
Fusion event
HIV-PSMA2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
42961786/42922187 (Hg38)
End
42961786/42922187 (Hg38)
Orient
-
Location type
Intronic
Target gene
PSMA2
miRNAs that regulate target gene
hsa-mir-132-3p ; hsa-mir-29c-3p ; hsa-mir-186-5p ; hsa-mir-191-5p ; hsa-mir-100-5p ; hsa-mir-99a-5p ; hsa-let-7a-5p ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-3668 ; hsa-mir-548aj-5p ; hsa-mir-5680 ; hsa-mir-497-3p ; hsa-mir-651-5p ; hsa-mir-302c-5p ; hsa-mir-616-3p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-3159 ; hsa-mir-595 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-212-3p
Nearest miRNA
hsa-mir-1183/Upstream/6002755; hsa-mir-10399/Downstream/228708;
Nearest TSS
ENST00000635602/Upstream/9882; ENST00000432845/Downstream/5277;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/9881, chr7-CpG: 50/Downstream/9848
Upstream sequence
AAGAAGGCTAGAAGGATGGAAACcaaaaaggcatgaagaaacttttggaggttctggaaatttttgatatcctcattgtagtaatggtttcttcaggcat
Downstream sequence
ttacatatatcagaactcatcaaactgATGAGCTGGTGATGATGCAATTAAGTGTAAAATTATGTAAAAAATCCAGTTAAAAGAAATTGAGGTTAACTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate