Basic Information
VIS ID
TVIS30011003
Fusion event
HIV-SEPTIN7P2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
45770224/45730625 (Hg38)
End
45770224/45730625 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
SEPTIN7P2
Nearest miRNA
hsa-mir-1183/Upstream/848825; hsa-mir-10399/Downstream/11225160;
Nearest TSS
ENST00000635602/Upstream/46240; ENST00000457280/Downstream/142457;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/3322, chr7-CpG: 64/Downstream/37959
Upstream sequence
TTTTTAATATAGTTGCCTCTGATCTCCTGAGCACACACAGTGTCAGCGACTGccctgaaacagcataccaaatgtgtttgccagcattcttccagtgaaa
Downstream sequence
gggtccaaagcttttgttacattttcaaagagtctgtaattccCGCTGTCCCCTAACACCCCACAAATCTTTTTTAGGCTCTAGAAAAGAAATAATCTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate