Basic Information
VIS ID
TVIS30011007
Fusion event
HIV-KIAA1324L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.12
Reference genome
GRCh37/hg19
Start
86648758/87019442 (Hg38)
End
86648758/87019442 (Hg38)
Orient
+
Location type
Intronic
Target gene
KIAA1324L
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-623 ; hsa-mir-6832-3p ; hsa-mir-204-5p ; hsa-mir-211-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p
Nearest miRNA
hsa-mir-10525/Upstream/11104173; hsa-mir-10399/Downstream/5184573;
Nearest TSS
ENST00000635602/Upstream/53467; ENST00000561473/Downstream/40073;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/232646, chr7-CpG: 46/Downstream/39939
Upstream sequence
tttgtagagacctcatttcagatgttgcctaggctggtcttgaactcctgggctcaagcggtctgcccacctcagcctcctagaatgctgggattaaagg
Downstream sequence
aatgagccacgatgcccagccCATTATATTTTTCAAAAATCTCTTCTGGTCATTAGGAAAAAGACAAAACTCACTAAAAGTCATTAAGCAGGCATTCACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate