Basic Information
VIS ID
TVIS30011013
Fusion event
HIV-LAMB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
107567499/107927054 (Hg38)
End
107567499/107927054 (Hg38)
Orient
+
Location type
Intronic
Target gene
LAMB1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-16-5p ; hsa-mir-760 ; hsa-mir-500a-3p ; hsa-mir-193b-3p ; hsa-mir-125a-5p
Nearest miRNA
hsa-mir-10525/Upstream/5455523; hsa-mir-10399/Downstream/6726291;
Nearest TSS
ENST00000635602/Upstream/22386; ENST00000608515/Downstream/2923;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/35516, chr7-CpG: 176/Downstream/74296
Upstream sequence
TCCACATCTGATCTCCTTTCAAAGTAGAATCAATAAACATTGACTTTTAAAAGCTAGCCAAAGTAAGCAGTTGAGCCCATGACAAAAGAATCAATTTCAC
Downstream sequence
TGAGCACTCAATTTTTCTTTAAAATGATCTTCAAGGATGGGTCTAATTACATAGAATTAACTGAATAACAGTACTGCTATAATGAAGTTAATAAGGGTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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