Basic Information
VIS ID
TVIS30011014
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
108541829/108901772 (Hg38)
End
108541829/108901772 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/6430241; hsa-mir-10399/Downstream/5751573;
Nearest TSS
ENST00000635602/Upstream/17185; ENST00000413406/Downstream/7681;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/331310, chr7-CpG: 68/Downstream/2660251
Nearby gene
C7orf66(No orient, 17185)
Upstream sequence
atttattctgcttgggattcattggacttcctgagtttgagaattgatagaattcagtaattctgaaaaatgctgaaccattttctctttatatactgta
Downstream sequence
ttgtcatcatctagtctattatatgcttctagaaagttgattaaatatgttagagattttcactttatcttcattattatcaattcctcttttatggttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate