VISDB Viral Integration Site DataBase

VIS ID

TVIS30011018

Fusion event

HIV-TNPO3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q32.1

Reference genome

Start

End

128681567/129041513 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-34a-5p ; hsa-mir-30a-5p ; hsa-mir-24-3p ; hsa-mir-16-5p ; hsa-mir-423-3p ; hsa-mir-149-5p ; hsa-mir-15b-5p ; hsa-mir-17-5p ; hsa-mir-210-3p ; hsa-mir-6776-5p ; hsa-mir-7977 ; hsa-mir-143-5p ; hsa-mir-4284 ; hsa-mir-6499-3p ; hsa-mir-20b-3p ; hsa-mir-5693 ; hsa-mir-383-3p ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-629-3p ; hsa-mir-665 ; hsa-mir-711 ; hsa-mir-7160-5p ; hsa-mir-3934-3p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-767-3p ; hsa-mir-4649-3p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-4695-5p ; hsa-mir-6808-5p ; hsa-mir-4684-5p ; hsa-mir-6771-3p ; hsa-mir-3675-3p ; hsa-mir-548c-3p ; hsa-mir-6516-3p ; hsa-mir-1257 ; hsa-mir-4286 ; hsa-mir-3607-5p ; hsa-mir-4760-3p ; hsa-mir-125a-5p ; hsa-mir-125b-5p ; hsa-mir-345-3p ; hsa-mir-4319 ; hsa-mir-4732-3p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-6515-3p ; hsa-mir-670-5p ; hsa-mir-6749-3p ; hsa-mir-7113-3p

Nearest miRNA

hsa-mir-10525/Upstream/833570; hsa-mir-10399/Downstream/728870;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/102811, chr7-CpG: 60/Downstream/12946

Upstream sequence

TTCAACCAAATCCTGATACCCTACAAACTACAGTACATTGCTCATTGTTCTTCCCCTCTGCTAAACAGCAGAAAAAAGGAAGGGAAGGAAGAGAATCAAG

Downstream sequence

GAAGGAAAAGGGATTCTTTATAAGGAGAGAATAAAGCACTTACACTTCATAGGACTTTCTAGCCACAGATGCCAGGTGCTACCCACTGAAATCCAGGCTT