Basic Information
VIS ID
TVIS30011019
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
128706358/129066304 (Hg38)
End
128706358/129066304 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/858361; hsa-mir-10399/Downstream/704079;
Nearest TSS
ENST00000635602/Upstream/11131; ENST00000467614/Downstream/60214;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/11001, chr7-CpG: 133/Downstream/59977
Nearby gene
TPI1P2(No orient, 9065)
Upstream sequence
AATGGGAGAGATCCCCAGCTCCAGCTCCATCAATGTGCCTCTGTTAGAGGCTAGAATCACTCTCATCCAATAGAAAGGGTCAACTGAATCTGAAGACATG
Downstream sequence
ATACCAAATAGAGGAATCTGGCAGCACACTAAGAAGATAAAGAGGGCAATAGTGGTCCACAGCACTTTCTCCTTAAACTGAATCCTCCTCTCCAGCTTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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