VISDB Viral Integration Site DataBase

VIS ID

TVIS30011023

Fusion event

HIV-KIAA1549 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q34

Reference genome

Start

End

138596056/138911310 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-29c-3p ; hsa-mir-148a-3p ; hsa-mir-92a-3p ; hsa-let-7b-5p ; hsa-mir-4705 ; hsa-mir-218-5p ; hsa-mir-4701-5p ; hsa-mir-129-5p ; hsa-mir-3149 ; hsa-mir-500b-3p ; hsa-mir-1266-3p ; hsa-mir-888-3p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-1306-5p ; hsa-mir-1303 ; hsa-mir-3674 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-4732-5p ; hsa-mir-6832-5p ; hsa-mir-4781-3p ; hsa-mir-483-5p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-7156-3p ; hsa-mir-6861-3p ; hsa-mir-1184 ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-4700-3p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-4698 ; hsa-mir-6504-3p ; hsa-mir-4438

Nearest miRNA

hsa-mir-10525/Upstream/787489; hsa-mir-10399/Downstream/132790;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/41557, chr7-CpG: 150/Downstream/69655

Upstream sequence

GTCTGGTCACGGACAAGCTTACTGTTTATAAGCACATTTATGACGGATATTGCCGTGTAAACGAAAGGACCGGATGTTACCAGAAAAGTGAAGTCAGTAA

Downstream sequence

ATAGTTCGTAAACCTAGGGAAATAAGAAATACAAAGACAATTCAAACTTAAAGGAAGTTGTGTTACACAGaaaaataaaaaattataaactaaaaaaaCT