VISDB Viral Integration Site DataBase

VIS ID

TVIS30011036

Fusion event

HIV-NCAPG2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q36.3

Reference genome

Start

End

158470929/158678237 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-26b-5p ; hsa-mir-1260b ; hsa-mir-500a-3p ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-7977 ; hsa-mir-6804-3p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-6746-5p ; hsa-mir-6739-3p ; hsa-mir-375 ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-4314 ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-6845-3p ; hsa-mir-4780 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-217 ; hsa-mir-2467-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-3612 ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4325 ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-6076 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6797-3p ; hsa-mir-6807-3p ; hsa-mir-6807-5p ; hsa-mir-6840-3p ; hsa-mir-767-5p ; hsa-mir-7703 ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-10399/Upstream/86541;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/89708, chr7-CpG: 94/Downstream/26229

Upstream sequence

CTCAGGTTTAAGAAATACCAATAAAGCAAAAAGCATGAGAGAACAGTTAAGGTACACAGAGGATACAGGAAATAACCACTGCTCTTACTTATTTATCAGA

Downstream sequence

TCACCTCCTTTGTCTCCTCATGATAGAGCCTAATTTCCATCTAAAGGTTGAGTTAAAGCCTCAAGAGGTGCAGCACCAGGGACAGGAGCTCTCAGCCAGC