VISDB Viral Integration Site DataBase

VIS ID

TVIS30011039

Fusion event

HIV-MTMR9 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

p23.1

Reference genome

Start

End

11181996/11324487 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-34a-5p ; hsa-mir-148a-3p ; hsa-mir-21-5p ; hsa-mir-3674 ; hsa-mir-142-3p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-5089-5p ; hsa-mir-6878-3p ; hsa-mir-433-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4454 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-192-5p ; hsa-mir-215-5p ; hsa-mir-4502 ; hsa-mir-1323 ; hsa-mir-3065-5p ; hsa-mir-3529-3p ; hsa-mir-374a-3p ; hsa-mir-495-3p ; hsa-mir-548o-3p ; hsa-mir-552-5p ; hsa-mir-5582-3p ; hsa-mir-5688 ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p

Nearest miRNA

hsa-mir-124-1/Upstream/289185; hsa-mir-10400/Downstream/1394645;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/39310, chr8-CpG: 104/Downstream/22829

Upstream sequence

TATTTTTGACTTACTTTCTTTGCTGTAGTTATGAACCTTGGGGCATTAAAATCCCATGGCAAGGAGCATAAGAGATGTTCTCGTAGCTCTGCGTTGTGTG

Downstream sequence

AAATGTCCATCTTAGTTTTGttaaaaaaaaaaaaaaaaaaaGGAAACAGCCTCACTTTTTTGTGCTCCCTCAGAATTGCTTGCTATGTCTGTTAATACAG