Basic Information
VIS ID
TVIS30011040
Fusion event
HIV-MTMR7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p22
Reference genome
GRCh37/hg19
Start
17155370/17297861 (Hg38)
End
17155370/17297861 (Hg38)
Orient
-
Location type
UTR3
Target gene
MTMR7
miRNAs that regulate target gene
hsa-mir-3977 ; hsa-mir-103a-2-5p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-409-3p
Nearest miRNA
hsa-mir-124-1/Upstream/2444351; hsa-mir-10400/Downstream/383717;
Nearest TSS
ENST00000518652/Upstream/1400; ENST00000519515/Downstream/246;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/50507, chr8-CpG: 64/Downstream/115233
Upstream sequence
TGCTCTGAAGAATCTGTGAAAGTACAGTAAAGTTTTAATAAGCAATAAATGTAACCTTTTATATAAATCTCAGTGCTAGGTTAACTTCTAATAAGCAGAC
Downstream sequence
GAACATGTTACATAAATTATAATGTCTGTCTTGTAAAAAAGTTGAGGGGACTAAAAGTTTATGACTCTGATATGGAAGTTGTCATATTAAAAAACTACAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate