Basic Information
VIS ID
TVIS30011044
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
23348550/23491037 (Hg38)
End
23348550/23491037 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/1246000; hsa-mir-10400/Downstream/1462759;
Nearest TSS
ENST00000518652/Upstream/32436; ENST00000519192/Downstream/3161;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/33060, chr8-CpG: 125/Downstream/37670
Nearby gene
ENTPD4(No orient, 33306)
Upstream sequence
ACGTCCAGTAATTCACTATAAGCAGAAGCCATGATTGTTCTTAGGCTGGCGCTTGGGTATTTGAATTAAAATGTATCTTGTTACTCATTAAAGCCAAAGC
Downstream sequence
TATACTAGGTCAGGCTTTGCAAGCCTAAtttttttgttgttgttgttaagacagagtctccctctgccacccaggctggagtgcagtggtgtgatcttgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate