Basic Information
VIS ID
TVIS30011047
Fusion event
HIV-GTF2E2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
30471583/30614066 (Hg38)
End
30471583/30614066 (Hg38)
Orient
-
Location type
Intronic
Target gene
GTF2E2
miRNAs that regulate target gene
hsa-mir-766-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-8081 ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-6500-3p ; hsa-mir-4724-5p ; hsa-mir-100-3p ; hsa-mir-548g-3p ; hsa-mir-548av-3p
Nearest miRNA
hsa-mir-124-1/Upstream/656718; hsa-mir-10400/Downstream/10656982;
Nearest TSS
ENST00000518652/Upstream/1701; ENST00000626298/Downstream/24534;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/228704, chr8-CpG: 72/Downstream/43587
Upstream sequence
CAACAAAATATCTTCCTATCCCTGCAGTACCTTATGCTTTAAATTTCCTAAAACAAAAACAATTCAATTTACAAGCACACAAACTATAAATCTGGCAATA
Downstream sequence
CAAAATAAGCATTAATCTGTAAAAACATTAAGTCGAATTGGTACAATGACTTCTTTACAACTATTACACAAAGTCTTACCTTTAACATTTTGAAACAGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate