Basic Information
VIS ID
TVIS30011050
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
43093188/43238045 (Hg38)
End
43093188/43238045 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/341770; hsa-mir-10400/Downstream/18476743;
Nearest TSS
ENST00000518652/Upstream/41877; ENST00000518278/Downstream/3584192;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/96597, chr8-CpG: 95/Downstream/8301
Nearby gene
HGSNAT(No orient, 35218)
Upstream sequence
atattttgtgtacagtatataatatatattttgtgtactttgatattttatgtacagtatattatatgtgttttctgtactttgatattttatgtacagt
Downstream sequence
atataaaatgtatttggtgtactttgatattttatgcacagtatataatatgtatttggtgtactttgatattatatgtacagtatataatatatatttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate