Basic Information
VIS ID
TVIS30011054
Fusion event
HIV-MRPS28 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
80911860/79999625 (Hg38)
End
80911860/79999625 (Hg38)
Orient
-
Location type
Intronic
Target gene
MRPS28
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-12123/Upstream/667351; hsa-mir-10400/Downstream/241764;
Nearest TSS
ENST00000518652/Upstream/127866; ENST00000522494/Downstream/3523;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/107536, chr8-CpG: 45/Downstream/30257
Upstream sequence
TTTCTACGTGTACAAATGAAGATCTAATAATCATTCTGTGAAGAGTATAAACCTTCATTTCATGACAGATTAAAAACTGGAGAACATGAAATTTGCTATG
Downstream sequence
TTAAAAAGTTTCTCTCCAAAAAACAATGTATGTCGATAAAGAGCTGGAGTTGTTATCTACATAGCCGTAAGGGTATGTACATAGGATATGCAGGTAGAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate