Basic Information
VIS ID
TVIS30011062
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
113037956/112025727 (Hg38)
End
113037956/112025727 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/7541262; hsa-mir-10400/Downstream/617766;
Nearest TSS
ENST00000518652/Upstream/280209; ENST00000521500/Downstream/230201;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2049884, chr8-CpG: 21/Downstream/1406870
Nearby gene
CSMD3(No orient, 197203)
Upstream sequence
TCTGCCAGGAATTTTAATTTCTAAGCTGTCAACATTTTAGCACTTATATCTGATAACGGCTGTGATAATGCATGCTCCAGTCTTGTATCAGTTGCTTGCT
Downstream sequence
CTTCCATAAGTCAAAAGTGAAATATGGGTAACAATAATGTGAAAGACACAATGCAACTTTGAACTTTGATGCAATTTCAATGTTAACAAGTTATGTAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate